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Reviews and syntheses: Bacterial bioluminescence – ecology and impact in the biological carbon pump

Lisa Tanet , Severine Martini , Laurie Casalot , Christian Tamburini
Biogeosciences, 2020, 17 (14), pp.3757-3778. ⟨10.5194/bg-17-3757-2020⟩
Journal articles hal-02901948v1
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CHLSOC: the Chilean Soil Organic Carbon database, a multi-institutional collaborative effort

Marco Pfeiffer , José Padarian , Rodrigo Osorio , Nelson Bustamante , Guillermo Federico Olmedo , et al.
Earth System Science Data, 2020, 12 (1), pp.457-468. ⟨10.5194/essd-12-457-2020⟩
Journal articles hal-03147125v1
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Meta-omics Provides Insights into the Impact of Hydrocarbon Contamination on Microbial Mat Functioning

Johanne Aubé , Pavel Senin , Patricia Bonin , Olivier Pringault , Céline Jeziorski , et al.
Microbial ecology, 2020, 80 (2), pp.286-295. ⟨10.1007/s00248-020-01493-x⟩
Journal articles hal-03065790v1
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Oyster hemolymph is a complex and dynamic ecosystem hosting bacteria, protists and viruses

Samuel Dupont , A. Lokmer , E. Corre , J.-C. Auguet , Bruno Petton , et al.
Animal Microbiome, 2020, 2 (1), pp.12. ⟨10.1186/s42523-020-00032-w⟩
Journal articles hal-02563300v1
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Dissolved organic matter controls of arsenic bioavailability to bacteria

Martin Pothier , Véronique Lenoble , Cédric Garnier , Benjamin Misson , Charlotte Rentmeister , et al.
Science of the Total Environment, 2020, 716, pp.137118. ⟨10.1016/j.scitotenv.2020.137118⟩
Journal articles hal-03027565v1
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Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods

Damien Courtine , Jan Provaznik , Jerome Reboul , Guillaume Blanc , Vladimir Benes , et al.
GigaScience, 2020, 9 (9), pp.1 - 11. ⟨10.1093/gigascience/giaa099⟩
Journal articles hal-02964511v1
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Anaerobic oxidation of methane and associated microbiome in anoxic water of Northwestern Siberian lakes

Léa Cabrol , Frédéric Thalasso , Laure Gandois , Armando Sepulveda-Jauregui , Karla Martinez-Cruz , et al.
Science of the Total Environment, 2020, 736, pp.139588. ⟨10.1016/j.scitotenv.2020.139588⟩
Journal articles hal-03151740v1
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Oxygen and light determine the pathways of nitrate reduction in a highly saline lake

Nicolás Valiente , Franz Jirsa , Thomas Hein , Wolfgang Wanek , Patricia Bonin , et al.
Biogeosciences, 2020, ⟨10.5194/bg-2020-20⟩
Journal articles hal-03022672v1
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A novel Thermotoga strain TFO isolated from a Californian petroleum reservoir phylogenetically related to Thermotoga petrophila and T. naphthophila, two thermophilic anaerobic isolates from a Japanese reservoir: Taxonomic and genomic considerations

Zara M Summers , Hassiba Belahbib , Nathalie Pradel , Manon Bartoli , Pooja Mishra , et al.
Systematic and Applied Microbiology, 2020, 43 (6), pp.126132. ⟨10.1016/j.syapm.2020.126132⟩
Journal articles hal-03007670v1
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Towards the development of ecosystem-based indicators of mangroves functioning state in the context of the EU water framework directive

Guillaume Dirberg , Geneviève Barnaud , Olivier Brivois , Pierre Caessteker , Marie-Christine Cormier-Salem , et al.
Vie et Milieu / Life & Environment, 2020, 70 (3-4), pp.303-310
Journal articles hal-03495716v1
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In situ observations and modelling revealed environmental factors favouring occurrence of Vibrio in microbiome of the pelagic Sargassum responsible for strandings

Valerie Michotey , Aurelie Blanfuné , Cristele Chevalier , Marc Garel , Frédéric Diaz , et al.
Science of the Total Environment, 2020, 748, pp.141216. ⟨10.1016/j.scitotenv.2020.141216⟩
Journal articles hal-02933822v1
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Sub-oxycline methane oxidation can fully uptake CH4 produced in sediments: case study of a lake in Siberia

Frédéric Thalasso , Armando Sepulveda-Jauregui , Laure Gandois , Karla Martinez-Cruz , Oscar Gerardo-Nieto , et al.
Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-60394-8⟩
Journal articles hal-03147113v1
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Impacts of copper and lead exposure on prokaryotic communities from contaminated contrasted coastal seawaters: the influence of previous metal exposure

Clément Coclet , Cédric Garnier , Gaël Durrieu , Sébastien d'Onofrio , Nicolas Layglon , et al.
FEMS Microbiology Ecology, 2020, 96 (6), ⟨10.1093/femsec/fiaa048⟩
Journal articles hal-03027561v1
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Archaea, specific genetic traits, and development of improved bacterial live biotherapeutic products: another face of next-generation probiotics

Khaled Fadhlaoui , Marie-Edith Arnal , Matthieu Martineau , Paméla Camponova , Bernard Ollivier , et al.
Applied Microbiology and Biotechnology, 2020, 104 (11), pp.4705-4716. ⟨10.1007/s00253-020-10599-8⟩
Journal articles hal-02996543v1
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Production of Current by Syntrophy Between Exoelectrogenic and Fermentative Hyperthermophilic Microorganisms in Heterotrophic Biofilm from a Deep-Sea Hydrothermal Chimney

Guillaume Pillot , Sylvain Davidson , Richard Auria , Yannick Combet-Blanc , Anne Godfroy , et al.
Microbial ecology, 2020, 79 (1), pp.38-49. ⟨10.1007/s00248-019-01381-z⟩
Journal articles hal-02962527v1
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Diversity and evolution of bacterial bioluminescence genes in the global ocean

Thomas Vannier , Pascal Hingamp , Floriane Turrel , Lisa Tanet , Magali Lescot , et al.
NAR Genomics and Bioinformatics, 2020, 2 (2), ⟨10.1093/nargab/lqaa018⟩
Journal articles hal-02514159v1
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Stress factors resulting from the Arctic vernal sea-ice melt

Rémi Amiraux , Christopher Burot , Patricia Bonin , Guillaume Massé , Sophie Guasco , et al.
Elementa: Science of the Anthropocene, 2020, 8 (1), ⟨10.1525/elementa.076⟩
Journal articles hal-03458308v1
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A Multi-Omics Analysis Suggests Links Between the Differentiated Surface Metabolome and Epiphytic Microbiota Along the Thallus of a Mediterranean Seaweed Holobiont

Benoît Paix , Nathan Carriot , Raphaëlle Barry-Martinet , Stephane Greff , Benjamin Misson , et al.
Frontiers in Microbiology, 2020, 11, pp.494. ⟨10.3389/fmicb.2020.00494⟩
Journal articles hal-02519482v1
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Electrotrophy as potential primary metabolism for colonization of conductive surfaces in deep-sea hydrothermal chimneys

Guillaume Pillot , Sylvain Davidson , Laetitia Shintu , Oulfat Amin , Anne Godfroy , et al.
Preprints, Working Papers, ... hal-03022667v1
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Long-term monitoring emphasizes impacts of the dredging on dissolved Cu and Pb contamination along with ultraplankton distribution and structure in Toulon Bay (NW Mediterranean Sea, France)

N. Layglon , Benjamin Misson , Gaël Durieu , Clément Coclet , Sébastien d'Onofrio , et al.
Marine Pollution Bulletin, 2020, 156, pp.111196. ⟨10.1016/j.marpolbul.2020.111196⟩
Journal articles hal-02571468v1
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Impact of the microbial inoculum source on pre-treatment efficiency for fermentative H2 production from glycerol

Javiera Toledo-Alarcón , Léa Cabrol , David Jeison , Eric Trably , Jean-Philippe Steyer , et al.
International Journal of Hydrogen Energy, 2020, 45 (3), pp.1597-1607. ⟨10.1016/j.ijhydene.2019.11.113⟩
Journal articles hal-03147126v1
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Prokaryotic Diversity and Distribution Along Physical and Nutrient Gradients in the Tunisian Coastal Waters (South Mediterranean Sea)

Marianne Quemeneur , Malika Bel Hassen , Fabrice Armougom , Yosra Khammeri , Rim Lajnef , et al.
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.593540⟩
Journal articles hal-03033038v1
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Correlations between microbial population dynamics, bamA gene abundance and performance of anaerobic sequencing batch reactor (ASBR) treating increasing concentrations of phenol

Oscar Franchi , Léa Cabrol , Rolando Chamy , Francisca Rosenkranz
Journal of Biotechnology, 2020, 310, pp.40-48. ⟨10.1016/j.jbiotec.2020.01.010⟩
Journal articles hal-03147119v1
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Impact of the microbial inoculum source on pre-treatment efficiency for fermentative H2 production from glycerol

Javiera Toledo-Alarcón , Léa Cabrol , David Jeison , Eric Trably , Jean-Philippe Steyer , et al.
International Journal of Hydrogen Energy, 2020, 45 (3), pp.1597-1607. ⟨10.1016/j.ijhydene.2019.11.113⟩
Journal articles hal-02531470v1
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Intraspecific variability in membrane proteome, cell growth, and morphometry of the invasive marine neurotoxic dinoflagellate Alexandrium pacificum grown in metal-contaminated conditions

Cherif Chetouhi , Estelle Masseret , Cecilia Teodora Satta , Thierry Balliau , Mohamed Laabir , et al.
Science of the Total Environment, 2020, 715, pp.136834. ⟨10.1016/j.scitotenv.2020.136834⟩
Journal articles hal-02959936v1
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Impact of cigarette butts on microbial diversity and dissolved trace metals in coastal marine sediment

Marianne Quemeneur , Sandrine Chifflet , Fourat Akrout , Amel Bellaaj-Zouari , Malika Belhassen
Estuarine, Coastal and Shelf Science, 2020, 240, pp.106785. ⟨10.1016/j.ecss.2020.106785⟩
Journal articles hal-02881380v1
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Responses to the Hydrostatic Pressure of Surface and Subsurface Strains of Pseudothermotoga elfii Revealing the Piezophilic Nature of the Strain Originating From an Oil-Producing Well

Marie Roumagnac , Nathalie Pradel , Manon Bartoli , Marc Garel , Aaron Jones , et al.
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.588771⟩
Journal articles hal-03152104v1
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Iron corrosion induced by the hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus at 70°C

Oulfat Amin Ali , Emmanuel Aragon , Armand Fahs , Sylvain Davidson , Bernard Ollivier , et al.
International Biodeterioration and Biodegradation, 2020, 154, pp.105056. ⟨10.1016/j.ibiod.2020.105056⟩
Journal articles hal-03181343v1
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Megasphaera vaginalis sp. nov. and Anaerococcus vaginimassiliensis sp. nov., new bacteria isolated from vagina of French woman with bacterial vaginosis

A. Bordigoni , C.I. Lo , E.K. Yimagou , K. Diop , B. Nicaise , et al.
New Microbes and New Infections, 2020, 37, pp.100706. ⟨10.1016/j.nmni.2020.100706⟩
Journal articles hal-02962477v1
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Comparative Genomics Unveils Regionalized Evolution of the Faustovirus Genomes

Khalil Geballa-Koukoulas , Hadjer Boudjemaa , Julien Andreani , Bernard Scola , Guillaume Blanc
Viruses, 2020, 12 (5), pp.577. ⟨10.3390/v12050577⟩
Journal articles hal-02639526v1